| Protein ZmEREB58 | |
|---|---|
|
ZmEREB58 is a protein in the AP2/ERF-ERF family.
|
|
| Information | |
| TF Name: | ZmEREB58 |
| Species: | Maize |
| TF Family: | AP2/ERF-ERF |
| Gene Name(Synonym): | EREB58 |
| Uniprot ID: | C0PNW1 |
| Subgenome: | 1 |
Protein ZmEREB58
ZmEREB58 is a protein in the AP2/ERF-ERF family.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF00847 | |
| Zm00001eb065180_T002 |  |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d034920 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034920 | DAPseq |  |
sequence | fimo | position |
| Zm00001d034920 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d034920 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmEREB58 is the regulator
Interactions where ZmEREB58 is the target
Expand
Zm00001eb065180_T002 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF00847 |
|
| Hover here to show all domains | |
Nucleotide Sequence
Copy to clipboard
Expand
CTGTAATCCTCATGGTGAGCAGCAC...
CTGTAATCCTCATGGTGAGCAGCACCTCCCACTCCCAGAATTCAAACAGCTCCCCGTCGCCTCTGCACCTCAGCACTGGCATCGTCGGCTTCCTCGCCCGCCGTGCCGCCATGACGCGCCAACCATCATCCTTCCAGTTCCACCAGCCCCGCGTGGCAGTGCCACCGCTCGACTCGCCAGGCTCCTCCGTCGACTCCTCCGCGCCGACGTGGGTCCAGCAACAGCAGCGCGCGCCGCCCGCCCCCGTGCTCGCATTCGACGGCAACGACACCGACGAGATGGCGCTGCTGGACATGATCACCCGGCAGGTGCAGGGGCAGGGGCAGGAGGGGGCGACGTCGAAGCAGGAAGAAGCAGAAAGGTCCTTGGGGGCTGGCGGCGGGCGGCCCTACCGCGGGGTGCGCAAGCGTCCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACTCCACGCGCAACGGCGTGCGCGTGTGGCTGGGCACCTTCGACAGCGCCGAGGCGGCGGCGTTGGCGTACGACCAGGCGGCGTTCGCCATGCGTGGCGAGGCCGCCGTGCTCAACTTCCCCGTGGAGCGGGTCCGCCAGTCCCTGGAAGGGATGGGGATGGGGATGGGCATGCCCATCCCTGGCTCTGGCTCTGCCTCTGCCTCGCCCGTGGTGGCGCTCAAGCGGCGGCATTCCATGCGGATGCGGCGGCCAGCCAGCCGGAACCGCAAGGCCAAGACGGCGACAAGAAGCGAAGTCATGGAGCTGGAAGACCTCGGAGCAGACTACCTGGAGGAGCTGCTGGGAGCCACCGCCACCGAGGCAGAGGAGCAGACCATGTCCCACTCCTCCTCGTCGTCCTGGCACCGGAGCCACCACTCCATCTGAACCTCTGCCTAGGCAGAGGCACGCACAAGTCAAGAACGCATCTTGTTTGTTTGAAGGATTTAGAGTAGATTCTAGTAAGGTTGGTCTTGTTTGAGTTTGAGGTTACATGTTTTCAGCCATTCTTGCTTATGCACG
GRMZM2G381441_T01 from maize genome v3
Amino Acid Sequence
Copy to clipboard
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
Nucleotide Sequence
Copy to clipboard
Expand
GAAAGACAGACAGAGGCAGAAGAAG...
GAAAGACAGACAGAGGCAGAAGAAGAGCAGAGCAGTATAAAAGGAGGGAGGCGCGCGTGCAATTGTCTCCAACCATTCCACACCAGTTTGAATTGGACCTGTAATCCTCATGGTGAGCAGCACCTCCCACTCCCAGAATTCAAACAGCTCCCCGTCGCCTCTGCACCTCAGCACTGGCATCGTCGGCTTCCTCGCCCGCCGTGCCGCCATGACGCGCCAACCATCATCCTTCCAGTTCCACCAGCCCCGCGTGGCAGTGCCACCGCTCGACTCGCCAGGCTCCTCCGTCGACTCCTCCGCGCCGACGTGGGTCCAGCAACAGCAGCGCGCGCCGCCCGCCCCCGTGCTCGCATTCGACGGCAACGACACCGACGAGATGGCGCTGCTGGACATGATCACCCGGCAGGTGCAGGGGCAGGGGCAGGAGGGGGCGACGTCGAAGCAGGAAGAAGCAGAAAGGTCCTTGGGGGCTGGCGGCGGGCGGCCCTACCGCGGGGTGCGCAAGCGTCCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACTCCACGCGCAACGGCGTGCGCGTGTGGCTGGGCACCTTCGACAGCGCCGAGGCGGCGGCGTTGGCGTACGACCAGGCGGCGTTCGCCATGCGTGGCGAGGCCGCCGTGCTCAACTTCCCCGTGGAGCGGGTCCGCCAGTCCCTGGAAGGGATGGGGATGGGGATGGGCATGCCCATCCCTGGCTCTGGCTCTGCCTCTGCCTCGCCCGTGGTGGCGCTCAAGCGGCGGCATTCCATGCGGATGCGGCGGCCAGCCAGCCGGAACCGCAAGGCCAAGACGGCGACAAGAAGCGAAGTCATGGAGCTGGAAGACCTCGGAGCAGACTACCTGGAGGAGCTGCTGGGAGCCACCGCCACCGAGGCAGAGGAGCAGACCATGTCCCACTCCTCCTCGTCGTCCTGGCACCGGAGCCACCACTCCATCTGAACCTCTGCCTAGGCAGAGGCACGCACAAGTCAAGAACGCATCTTGTTTGTTTGAAGGATTTAGAGTAGATTCTAGTAAGGTTGGTCTTGTTTGAGTTTGAGGTTACATGTTTTCAGCCATTCTTGCTTATGCACGTTCCTTTCTCCAAGGAGAAGCACTAACTTACTCCTGTACAGAAAAAAAAAAACATGCTCACGAAGAGTCCTGGATGGAGTTC
Zm00001d034920_T001 from maize genome v4
Amino Acid Sequence
Copy to clipboard
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEEAERSLGAGGGRPYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSA
EAAALAYDQAAFAMRGEAAVLNFPVERVRQSLEGMGMGMGMPIPGSGSASASPVVALKRRHSMRMRRPASRNRKAKTATR
SEVMELEDLGADYLEELLGATATEAEEQTMSHSSSSSWHRSHHSI
Nucleotide Sequence
Copy to clipboard
Expand
ATGGTGAGCAGCACCTCCCACTCCC...
ATGGTGAGCAGCACCTCCCACTCCCAGAATTCAAACAGCTCCCCGTCGCCTCTGCACCTCAGCACTGGCATCGTCGGCTTCCTCGCCCGCCGTGCCGCCATGACGCGCCAACCATCATCCTTCCAGTTCCACCAGCCCCGCGTGGCAGTGCCACCGCTCGACTCGCCAGGCTCCTCCGTCGACTCCTCCGCGCCGACGTGGGTCCAGCAACAGCAGCGCGCGCCGCCCGCCCCCGTGCTCGCATTCGACGGCAACGACACCGACGAGATGGCGCTGCTGGACATGATCACCCGGCAGGTGCAGGGGCAGGGGCAGGAGGGGGCGACGTCGAAGCAGGAAGAAGCAGAAAGGTCCTTGGGGGCTGGCGGCGGGCGGCCCTACCGCGGGGTGCGCAAGCGTCCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACTCCACGCGCAACGGCGTGCGCGTGTGGCTGGGCACCTTCGACAGCGCCGAGGCGGCGGCGTTGGCGTACGACCAGGCGGCGTTCGCCATGCGTGGCGAGGCCGCCGTGCTCAACTTCCCCGTGGAGCGGGTCCGCCAGTCCCTGGAAGGGATGGGGATGGGGATGGGCATGCCCATCCCTGGCTCTGGCTCTGCCTCTGCCTCGCCCGTGGTGGCGCTCAAGCGGCGGCATTCCATGCGGATGCGGCGGCCAGCCAGCCGGAACCGCAAGGCCAAGACGGCGACAAGAAGCGAAGTCATGGAGCTGGAAGACCTCGGAGCAGACTACCTGGAGGAGCTGCTGGGAGCCACCGCCACCGAGGCAGAGGAGCAGACCATGTCCCACTCCTCCTCGTCGTCCTGGCACCGGAGCCACCACTCCATCTGA
Zm00001eb065170_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MPPLERHHGRGRGRARARDGHAHPHPHPFQGLADPLHGEVEHGGLATHGERRLVVRQRRRLGAVEGAQPHAHAVARGVPD
LRRELAPRTLAHPAVGPPAASPQGPFCFFLLRRRPLLPLPLHLPGDHVQQRHLVGVVAVECEHGGGRRALLLLDPRRRGG
VDGGAWRVERWHCHAGLVELEG
Nucleotide Sequence
Copy to clipboard
Expand
GACCACCTGAAAAAAGTCAAGTTAT...
GACCACCTGAAAAAAGTCAAGTTATGAATTATGATACATGGTTCAGTGCCCTGTCTAACATCATTATTCTTGTCCATGAACTCCATCCAGGACTCTTCGTGAGCATGTTTTTTTTTTTCTGTACAGGAGTAAGTTAGTGCTTCTCCTTGGAGAAAGGAACGTGCATAAGCAAGAATGGCTGAAAACATGTAACCTCAAACTCAAACAAGACCAACCTTACTAGAATCTACTCTAAATCCTTCAAACAAACAAGATGCGTTCTTGACTTGTGCGTGCCTCTGCCTAGGCAGAGGTTCAGATGGAGTGGTGGCTCCGGTGCCAGGACGACGAGGAGGAGTGGGACATGGTCTGCTCCTCTGCCTCGGTGGCGGTGGCTCCCAGCAGCTCCTCCAGGTAGTCTGCTCCGAGGTCTTCCAGCTCCATGACTTCGCTTCTTGTCGCCGTCTTGGCCTTGCGGTTCCGGCTGGCTGGCCGCCGCATCCGCATGGAATGCCGCCGCTTGAGCGCCACCACGGGCGAGGCAGAGGCAGAGCCAGAGCCAGGGATGGGCATGCCCATCCCCATCCCCATCCCTTCCAGGGACTGGCGGACCCGCTCCACGGGGAAGTTGAGCACGGCGGCCTCGCCACGCATGGCGAACGCCGCCTGGTCGTACGCCAACGCCGCCGCCTCGGCGCTGTCGAAGGTGCCCAGCCACACGCGCACGCCGTTGCGCGTGGAGTCCCGGATCTCCGCCGCGAACTTGCCCCACGGACGCTTGCGCACCCCGCGGTAGGGCCGCCCGCCGCCAGCCCCCAAGGACCTTTCTGCTTCTTCCTGCTTCGACGTCGCCCCCTCCTGCCCCTGCCCCTGCACCTGCCGGGTGATCATGTCCAGCAGCGCCATCTCGTCGGTGTCGTTGCCGTCGAATGCGAGCACGGGGGCGGGCGGCGCGCGCTGCTGTTGCTGGACCCACGTCGGCGCGGAGGAGTCGACGGAGGAGCCTGGCGAGTCGAGCGGTGGCACTGCCACGCGGGGCTGGTGGAACTGGAAGGATGATGGTTGGCGCGTCATGGCGGCACGGCGGGCGAGGAAGCCGACGATGCCAGTGCTGAGGTGCAGAGGCGACGGGGAGCTGTTTGAATTCTGGGAGTGGGAGGTGCTGCTCACCATGAGGATTACAGGTCCAATTCAAACTGG
Zm00001eb065180_T001 from maize genome v5
Amino Acid Sequence
Copy to clipboard
MVSSTSHSQNSNSSPSPLHLSTGIVGFLARRAAMTRQPSSFQFHQPRVAVPPLDSPGSSVDSSAPTWVQQQQRAPPAPVL
AFDGNDTDEMALLDMITRQVQGQGQEGATSKQEE
Nucleotide Sequence
Copy to clipboard
Expand
TTCCACACCAGTTTGAATTGGACCT...
TTCCACACCAGTTTGAATTGGACCTGTAATCCTCATGGTGAGCAGCACCTCCCACTCCCAGAATTCAAACAGCTCCCCGTCGCCTCTGCACCTCAGCACTGGCATCGTCGGCTTCCTCGCCCGCCGTGCCGCCATGACGCGCCAACCATCATCCTTCCAGTTCCACCAGCCCCGCGTGGCAGTGCCACCGCTCGACTCGCCAGGCTCCTCCGTCGACTCCTCCGCGCCGACGTGGGTCCAGCAACAGCAGCGCGCGCCGCCCGCCCCCGTGCTCGCATTCGACGGCAACGACACCGACGAGATGGCGCTGCTGGACATGATCACCCGGCAGGTGCAGGGGCAGGGGCAGGAGGGGGCGACGTCGAAGCAGGAAGAAGC
Copyright © 2023 Grassius.org | Last updated: 2023-06-26